How can I make fly Deno run server.js instead main.ts

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The builtin Deno builder won’t run anything but main.ts. If you remove the [build] section in fly.toml, and add this Dockerfile you should be good to go though:

FROM denoland/deno:1.13.2
WORKDIR /app
USER deno
COPY server.ts deps.* ./
RUN /bin/bash -c "deno cache deps.ts || true"
ADD . .
RUN deno cache server.ts
CMD ["run", "--allow-net", "server.ts"]
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